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BioTools
GabiPD released tools
MapMan desktop version
A user-driven tool that displays large datasets (e.g. gene expression data from Arabidopsis Affymetrix arrays) onto diagrams of metabolic pathways or other processes. MapMan was developed in cooperation with the
group of Mark Stitt
.
B. Usadel
et al
. 2005. Plant Physiol. 138:1195-1204
SATlotyper
Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT
J. Neigenfind
et al
. 2008. BMC Bioinformatics 9:356
SLocX
Prediction of protein subcellular localization using gene expression
Ryngajllo
et al
. 2011. Front Plant Sci 2:43
GabiPD's EMBOSS(v2.9.0) Interface
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Emma
Multiple alignment program - interface to ClustalW(v1.83) program
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Transeq
Translate nucleic acid sequences
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Backtranseq
Back translate a protein sequence
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Restrict
Finds restriction enzyme cleavage sites
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Getorf
Finds and extracts open reading frames (ORFs)
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Einverted
Finds DNA inverted repeats
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Etandem
Looks for tandem repeats in a nucleotide sequence
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Palindrome
Looks for inverted repeats in a nucleotide sequence
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Fuzznuc
Nucleic acid pattern search
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Seqret
Reads and writes (returns) original/reverse sequences
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Eprimer3
Picks PCR primers and hybridization oligos
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